cisCall 201604 Edition: Readme Index
- Quick Start Guide for cisCall
- Inputs
- cisMuton: Caller for SNVs/Indels
- cisFusion: Caller for Fusion Genes
- cisCton: Caller for Copy Number Alterations
- Miscellaneous Options
-
About the cisCall VirtualBox Image - cisCall Installation
- cisCall Parameters
cisCall, Clinical Sequencing Caller
cisCall is a caller specialized for identifying DNA aberrations in FFPE samples for clinical sequencing.
cisCall contains the following three modules:
- cisMuton: a caller for SNVs/indels
- cisFusion: a caller for fusion genes
- cisCton: a caller for copy number alterations
Notice: cisCall 201604 Edition is obsolete. Please use the latest version.
Getting started
To get started, please read the Quick Start Guide for cisCall first.
License
See the LICENSE about the license for cisCall.
Download
- cisCall 201604 Edition Source (
cisCall_201604.tar.gz
) The cisCall VirtualBox image file (tarball) is split into two files.We finished providing the cisCall VirtualBox image file.
Data availability
The sequencing data related to the paper,
Kato et al, A computational tool to detect DNA alterations tailored to formalin-fixed paraffin-embedded samples in cancer clinical sequencing, Genome Medicine, Accepted
are available on request via email, cisCall_tech [at mark] ml.res.ncc.go.jp (Please replace[at mark]with '@').
Contact information
- Contact e-mail address: cisCall_tech [at mark] ml.res.ncc.go.jp (Please replace[at mark]with '@').